Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W A add_one_pvalue() (in module analysis.invariance) added (dscat.diff.DiffResult attribute) adjusted_rand_index (analysis.stability.Comparison attribute) adjusted_rand_index() (in module analysis.drift) adjusted_slopes (analysis.prevalence.PrevalenceResult attribute) age at diagnosis aggregate (analysis.stability.StabilitySummary attribute) agreement_flag() (in module analysis.order) align() (analysis.drift.AlignmentMethod method) (analysis.drift.CentroidHungarian method) (analysis.drift.MembershipJaccard method) (in module analysis.cli) align_to_named() (in module analysis.reference) aligned (analysis.blocks.CoDriftResult attribute) alignment (analysis.attribution.Comparison attribute) (analysis.blocks.CoDriftResult attribute) (analysis.reference_scheme.DriftComparison attribute) Alignment (class in analysis.align) AlignmentMethod (class in analysis.drift) alpha (analysis.order.Schedule attribute) analysis.align module analysis.attribution module analysis.axes module analysis.blocks module analysis.cache module analysis.checkpoint module analysis.cli module analysis.cohort module analysis.cohort.schema module analysis.cohort.spark module analysis.cohort.ssc module analysis.config module analysis.demographics module analysis.drift module analysis.enrich module analysis.features module analysis.invariance module analysis.localise module analysis.model module analysis.order module analysis.paths module analysis.prevalence module analysis.profiling module analysis.progress module analysis.reference module analysis.reference_scheme module analysis.replicate module analysis.requirements module analysis.run module analysis.selection module analysis.stability module analysis.strata module analysis.strata_data module analysis.sweep module analysis.trajectory module analysis.trajectory_local module anchors (analysis.reference.NamedAlignment attribute) anchors_hold (analysis.reference.NamedAlignment attribute) append() (analysis.checkpoint.CheckpointLog method) artefacts_dir() (in module analysis.paths) as_dict() (analysis.features.Typing method) as_stratum() (analysis.drift.ReferenceModel method) assign() (analysis.strata.BinningPolicy method) (analysis.strata.FixedBands method) (analysis.strata.MaxEqualBins method) (analysis.strata.QuantileBins method) atlas() (in module figures.cli) atlas_figure() (in module figures.atlas) attribute() (in module analysis.cli) (in module figures.cli) attribute_contrast() (in module figures.cli) attribution_figure() (in module figures.attribution) AttributionResult (class in analysis.attribution) author_category_map() (in module analysis.config) author_feature_list() (in module analysis.config) autism class awe() (in module analysis.selection) axes (analysis.strata_data.StrataData attribute) axis (analysis.invariance.InvarianceResult attribute) (analysis.prevalence.PrevalenceResult attribute) (figures.publish.FigureSpec attribute) axis() (analysis.cohort.Cohort method) (analysis.cohort.spark.SparkCohort method) (analysis.cohort.ssc.SscCohort method) axis_mean (analysis.prevalence.PrevalenceResult attribute) AxisContext (class in analysis.axes) AxisSpec (class in analysis.axes) B b_escalate (analysis.order.Schedule attribute) b_screen (analysis.order.Schedule attribute) b_used (analysis.order.StepResult attribute) bandwidth (analysis.localise.KernelWindows attribute) bandwidth() (in module analysis.cli) bandwidth_for_effective_n() (in module analysis.localise) bch_confusion() (in module analysis.prevalence) benchmark (analysis.stability.NminResult attribute) benjamini_hochberg() (in module analysis.drift) (in module analysis.invariance) between-class separation BinningPolicy (class in analysis.strata) BlockResult (class in analysis.invariance) blocks (analysis.invariance.InvarianceResult attribute) blrt_step() (in module analysis.order) boot_p (analysis.prevalence.SlopeResult attribute) bootstrap_lr() (in module analysis.order) bootstrap_overall_correlation() (in module analysis.enrich) BootstrapInterval (class in analysis.enrich) BootstrapTube (class in analysis.trajectory_local) break_high (analysis.invariance.BlockResult attribute) break_low (analysis.invariance.BlockResult attribute) break_position (analysis.invariance.BlockResult attribute) (analysis.trajectory_local.BootstrapTube attribute) (analysis.trajectory_local.DirectionalInference attribute) (analysis.trajectory_local.DirectionalResult attribute) bridge_functionals() (in module analysis.invariance) brief() (in module figures.cli) brief_axis_style() (in module figures.style) brief_figures_dir() (in module figures.paths) Brownian bridge build() (in module docs_cli.cli) build_matrix() (in module analysis.cohort) build_milestone_disambiguator() (in module analysis.cohort.schema) build_reference() (in module analysis.drift) build_strata_data() (in module analysis.strata_data) build_time_grid() (in module analysis.invariance) build_typing() (in module analysis.features) C cache_hit (analysis.run.RunContext attribute) cache_path() (in module dscat.docs) canonical_json() (in module analysis.cache) capped (analysis.order.SearchResult attribute) capture (analysis.trajectory_local.ObservedTrajectory attribute) capture fraction capture_fraction() (in module analysis.trajectory_local) capture_hardware() (in module analysis.profiling) casewise_scores() (in module analysis.invariance) CasewiseScores (class in analysis.invariance) Catalogue (class in dscat.index) catalogue_dir() (in module dscat.paths) category (analysis.invariance.BlockResult attribute) category_correlation (analysis.replicate.ReplicationResult attribute) (analysis.stability.Comparison attribute) category_decomposition() (in module figures.cli) category_decomposition_figure() (in module figures.category_decomposition) category_grains() (in module analysis.trajectory_local) category_heatmaps_figure() (in module figures.category_decomposition) category_of() (in module analysis.attribution) category_signature() (in module analysis.enrich) category_totals() (in module analysis.attribution) CentroidHungarian (class in analysis.drift) centroids (analysis.drift.ReferenceModel attribute) (analysis.drift.StratumSummary attribute) changed (dscat.diff.DiffResult attribute) CheckpointLog (class in analysis.checkpoint) class_centroids() (in module analysis.model) class_distance() (analysis.drift.DistanceMethod method) (analysis.drift.FullStandardisedEuclidean method) (analysis.drift.JensenShannon method) (analysis.drift.Mahalanobis method) (analysis.drift.MeanAbsolute method) (analysis.drift.StandardisedEuclidean method) class_distances() (in module analysis.drift) class_names() (in module figures.data) class_overlap_matrix() (in module analysis.stability) class_separation() (in module analysis.drift) ClassAlignment (class in analysis.drift) clean() (in module docs_cli.cli) clear() (analysis.checkpoint.CheckpointLog method) clear_checkpoints() (in module analysis.checkpoint) clear_dataset() (dscat.index.Catalogue method) cls (analysis.invariance.BlockResult attribute) (analysis.invariance.FocalParameter attribute) clustered (analysis.trajectory_local.BootstrapTube attribute) clustered_bootstrap_tube() (in module analysis.trajectory_local) co_drift() (in module analysis.blocks) codes (analysis.strata.StratumAssignment attribute) coding (analysis.demographics.DemographicSpec attribute) CoDriftResult (class in analysis.blocks) coef (analysis.prevalence.MultinomialFit attribute) cohens_d() (in module analysis.enrich) Cohort (class in analysis.cohort) cohort() (in module analysis.cli) CohortMatrix (class in analysis.cohort) column (analysis.invariance.FocalParameter attribute) columns (analysis.trajectory.Embedding attribute) (dscat.config.DatasetConfig attribute) commit() (dscat.index.Catalogue method) common_columns() (in module analysis.drift) compare_to_reference() (in module analysis.stability) comparison (analysis.attribution.Movement attribute) Comparison (class in analysis.attribution) (class in analysis.stability) comparisons (analysis.stability.StabilitySummary attribute) compute_drift() (in module analysis.drift) compute_hash() (in module analysis.cache) conditioning_shrinkage() (in module analysis.blocks) ConditioningResult (class in analysis.blocks) confidence band container (dscat.config.DatasetConfig attribute) contingency (analysis.drift.StratumSummary attribute) contingency_table() (in module analysis.drift) contrast (analysis.blocks.GrainContrast attribute) contrast() (analysis.attribution.ContrastMethod method) (analysis.attribution.LogisticContrast method) (analysis.attribution.UnivariateContrast method) ContrastMethod (class in analysis.attribution) contributions() (analysis.attribution.DecompositionMethod method) (analysis.attribution.MahalanobisContribution method) (analysis.attribution.StandardisedContribution method) contributory_features() (in module analysis.enrich) control_specificity_bootstrap() (in module analysis.trajectory_local) ControlComparison (class in analysis.trajectory_local) convert_doc() (in module dscat.docs) corrected_onevsrest() (in module analysis.prevalence) correlation_ci (analysis.replicate.ReplicationResult attribute) CorrelationInterval (class in analysis.enrich) correlations (analysis.align.Alignment attribute) (analysis.reference.NamedAlignment attribute) cost (analysis.align.Alignment attribute) (analysis.reference.NamedAlignment attribute) counts (analysis.features.Typing property) (analysis.requirements.PolicyReport attribute) (analysis.strata.StratumAssignment attribute) covariates (analysis.axes.AxisContext attribute) (analysis.cohort.CohortMatrix attribute) coverage (analysis.invariance.InvarianceResult attribute) covers_zero (analysis.trajectory_local.FeatureInference attribute) cpu_s (analysis.profiling.UnitMetrics attribute) cpu_utilisation (analysis.profiling.UnitMetrics property) cross-validated log-likelihood cross_validated_log_likelihood() (in module analysis.order) csv (dscat.output.Format attribute) csv_columns() (in module analysis.cohort) curve (analysis.prevalence.PrevalenceResult attribute) cv_log_likelihood (analysis.order.SearchResult attribute) cvm (analysis.invariance.BlockResult attribute) D d (analysis.invariance.BlockResult attribute) d_eff (analysis.invariance.BlockResult attribute) data_root() (in module dscat.paths) dataset (analysis.cohort.CohortMatrix attribute) (dscat.config.Version attribute) (dscat.diff.DiffResult attribute) (dscat.ingest.IngestSummary attribute) (dscat.model.FeatureRow attribute) (dscat.model.TableRow attribute) DatasetConfig (class in dscat.config) datasets() (dscat.index.Catalogue method) decompose() (in module analysis.blocks) Decomposition (class in analysis.blocks) DecompositionMethod (class in analysis.attribution) definition (dscat.model.FeatureRow attribute) degenerate (analysis.stability.Comparison attribute) demographic_conditioning() (in module analysis.cli) (in module figures.cli) demographic_conditioning_figure() (in module figures.demographic_conditioning) demographics (analysis.requirements.PolicyReport attribute) (analysis.strata_data.StrataData attribute) DemographicSpec (class in analysis.demographics) dense_feature_figure() (in module figures.dense_features) dense_features() (in module figures.cli) derive_axes() (in module analysis.strata_data) describe() (in module dscat.queries) description (analysis.requirements.RequirementResult attribute) deserialise_summary() (in module analysis.drift) detail (analysis.requirements.RequirementResult attribute) df (analysis.prevalence.JointTest attribute) diagnostic era diagnostics (analysis.strata_data.StrataData attribute) dictionary_glob (dscat.config.DatasetConfig attribute) dictionary_path (dscat.config.Version attribute) dictionary_typing() (in module analysis.features) diff_draws (analysis.trajectory_local.ControlComparison attribute) diff_versions() (in module dscat.diff) difference (analysis.trajectory_local.ControlComparison attribute) differential item functioning DiffResult (class in dscat.diff) direction (analysis.invariance.BlockResult attribute) (analysis.order.SearchResult attribute) (analysis.order.StepResult attribute) direction_feature (analysis.invariance.BlockResult attribute) directional_figure() (in module figures.trajectory_local) directional_inference() (in module analysis.trajectory_local) directional_slopes() (in module analysis.invariance) directional_statistic() (in module analysis.trajectory_local) directional_test() (in module analysis.trajectory) DirectionalInference (class in analysis.trajectory_local) DirectionalResult (class in analysis.trajectory_local) discover_docs() (in module dscat.docs) discover_versions() (in module dscat.config) discriminant_plane() (in module analysis.trajectory_local) dispersions (analysis.drift.ReferenceModel attribute) (analysis.drift.StratumSummary attribute) displacement (analysis.trajectory_local.FeatureInference attribute) (analysis.trajectory_local.ObservedTrajectory attribute) displacement_atlas() (in module analysis.cli) display_hint (dscat.model.FeatureRow attribute) display_name (dscat.config.DatasetConfig attribute) display_title (dscat.model.FeatureRow attribute) (dscat.model.TableRow attribute) DistanceMethod (class in analysis.drift) docs_cache_dir() (in module dscat.paths) docs_cli.cli module docs_figures_dir() (in module figures.paths) drift() (in module analysis.cli) DriftComparison (class in analysis.reference_scheme) DriftResult (class in analysis.drift) DSM-5 boundary dsm_contrasts (analysis.prevalence.PrevalenceResult attribute) dt (analysis.invariance.TimeGrid attribute) E edge_perturbation (analysis.requirements.RequirementThresholds attribute) edges (analysis.strata.FixedBands attribute) (analysis.strata.StratumAssignment attribute) effective_sample_sizes() (in module analysis.localise) elbow_knee (analysis.order.SearchResult attribute) eligible (analysis.requirements.PolicyReport property) Embedding (class in analysis.trajectory) empirical fluctuation process Engine (class in dscat.docs) environment_versions() (in module analysis.cache) escalate_threshold (analysis.order.Schedule attribute) escalated (analysis.order.StepResult attribute) estimate_floor() (in module analysis.stability) estimator (analysis.prevalence.JointTest attribute) evaluate_policy() (in module analysis.requirements) expand_query() (in module dscat.queries) expectation-maximization explained_variance_ratio (analysis.trajectory.Embedding attribute) extract_sections() (in module dscat.docs) F false discovery rate family-clustered bootstrap family_ids() (analysis.cohort.Cohort method) (analysis.cohort.spark.SparkCohort method) (analysis.cohort.ssc.SscCohort method) feature (analysis.invariance.FocalParameter attribute) feature_displacement (analysis.trajectory_local.BootstrapTube attribute) feature_enrichment() (in module analysis.enrich) feature_names (analysis.cohort.CohortMatrix property) feature_sources() (in module dscat.queries) FeatureInference (class in analysis.trajectory_local) FeatureRow (class in dscat.model) features (analysis.cohort.CohortMatrix attribute) field_type (dscat.model.FeatureRow attribute) fieldid_row (dscat.config.DatasetConfig attribute) figure_stem() (in module figures.paths) figures.atlas module figures.attribution module figures.category_decomposition module figures.cli module figures.data module figures.demographic_conditioning module figures.dense_features module figures.invariance module figures.nmin module figures.paths module figures.prevalence module figures.publish module figures.referent_decomposition module figures.replication module figures.reproduction module figures.roughness module figures.selection module figures.stability module figures.style module figures.trajectory module figures.trajectory_local module figures_dir() (in module figures.paths) FigureSpec (class in figures.publish) file_bytes (dscat.model.TableRow attribute) file_digest() (in module analysis.cache) file_glob (dscat.config.DatasetConfig attribute) file_name (figures.publish.FigureSpec attribute) file_path (dscat.model.TableRow attribute) find_documents() (in module dscat.queries) find_feature() (in module dscat.queries) find_repo_root() (in module analysis.paths) (in module dscat.paths) fit() (in module analysis.cli) fit_class (analysis.attribution.Movement attribute) fit_corrected_multinomial() (in module analysis.prevalence) fit_embedding() (in module analysis.trajectory) fit_gfmm() (in module analysis.model) fit_k() (in module analysis.order) fit_k_plus_one() (in module analysis.order) fit_labels (analysis.attribution.Comparison attribute) fit_local_summaries() (in module analysis.sweep) fit_locale() (in module analysis.localise) fit_naive_multinomial() (in module analysis.prevalence) fit_null_summaries() (in module analysis.sweep) fit_pair() (in module analysis.order) fit_soft_multinomial() (in module analysis.prevalence) FitPair (class in analysis.order) FitResult (class in analysis.model) fits (analysis.stability.StabilitySummary attribute) FixedBands (class in analysis.strata) flags (analysis.requirements.PolicyReport property) floor (analysis.stability.NminResult attribute) floor_ci (analysis.stability.NminResult attribute) fluctuation_process() (in module analysis.invariance) focal_blocks() (in module analysis.invariance) focal_grid() (in module analysis.localise) focal_points (analysis.trajectory_local.DirectionalResult attribute) (analysis.trajectory_local.ObservedTrajectory attribute) focal_ref (analysis.trajectory_local.ObservedTrajectory attribute) FocalParameter (class in analysis.invariance) Format (class in dscat.output) frame_digest() (in module analysis.cache) from_v (dscat.diff.DiffResult attribute) FullStandardisedEuclidean (class in analysis.drift) G gaussian_weights() (in module analysis.localise) general finite mixture model get_cohort() (in module analysis.cohort) git_commit() (in module analysis.cache) grain_bands (analysis.trajectory_local.BootstrapTube attribute) grain_contrast() (in module analysis.blocks) grain_magnitude (analysis.trajectory_local.ObservedTrajectory attribute) grain_magnitude() (in module analysis.trajectory_local) GrainContrast (class in analysis.blocks) greedy_overlap_align() (in module analysis.align) grid (analysis.localise.KernelWindows attribute) group_by (dscat.config.DatasetConfig attribute) H HardBins (class in analysis.localise) house_style() (in module figures.style) hungarian_align() (in module analysis.align) I id_dichotomy() (in module analysis.strata) importances (analysis.attribution.AttributionResult attribute) index (analysis.axes.AxisContext attribute) (analysis.invariance.TimeGrid attribute) index_path() (in module dscat.paths) infer_from_dictionary() (in module analysis.features) IngestSummary (class in dscat.ingest) init_schema() (dscat.index.Catalogue method) insert_documents() (dscat.index.Catalogue method) insert_features() (dscat.index.Catalogue method) insert_synonyms() (dscat.index.Catalogue method) insert_tables() (dscat.index.Catalogue method) instrument_map() (in module analysis.features) instrument_years (analysis.strata_data.StrataData attribute) integrate() (analysis.cohort.Cohort method) (analysis.cohort.spark.SparkCohort method) (analysis.cohort.ssc.SscCohort method) invariance() (in module analysis.cli) (in module figures.cli) invariance_process_figure() (in module figures.invariance) invariance_responsibilities() (in module analysis.cli) invariance_trajectory() (in module analysis.cli) InvarianceResult (class in analysis.invariance) is_degenerate_fit() (in module analysis.drift) J JensenShannon (class in analysis.drift) jitter (analysis.order.Recipe attribute) joint_tests (analysis.prevalence.PrevalenceResult attribute) JointTest (class in analysis.prevalence) json (dscat.output.Format attribute) K k (analysis.order.FitPair attribute) k_alt (analysis.order.StepResult attribute) k_null (analysis.order.StepResult attribute) k_values (analysis.selection.SelectionResult attribute) kernel (analysis.localise.KernelWindows attribute) KernelWindows (class in analysis.localise) key (analysis.requirements.RequirementResult attribute) kind (analysis.axes.AxisSpec attribute) (analysis.demographics.DemographicSpec attribute) (analysis.invariance.FocalParameter attribute) kneedle_knee() (in module analysis.order) L label (analysis.axes.AxisSpec attribute) (analysis.demographics.DemographicSpec attribute) (analysis.invariance.BlockResult attribute) (analysis.invariance.TopProcess attribute) (analysis.localise.LocalFit attribute) (analysis.reference_scheme.QueryFit attribute) (analysis.sweep.LocaleSummary attribute) labels (analysis.drift.ReferenceModel attribute) (analysis.model.FitResult attribute) (analysis.strata.FixedBands attribute) (analysis.strata.StratumAssignment attribute) lag (analysis.strata_data.StrataData attribute) latent class latest_version() (dscat.index.Catalogue method) latest_version_map() (in module dscat.queries) layout (dscat.config.DatasetConfig attribute) ld (analysis.trajectory_local.BootstrapTube attribute) (analysis.trajectory_local.ObservedTrajectory attribute) likelihood-ratio test linear discriminant analysis list_documents() (in module dscat.queries) list_tables() (in module dscat.queries) Litman feature set litman_typing_dir() (in module analysis.config) ll_k (analysis.order.FitPair attribute) ll_k1 (analysis.order.FitPair attribute) lmr_lrt_proxy() (in module analysis.selection) load (analysis.axes.AxisSpec attribute) (analysis.demographics.DemographicSpec attribute) load() (analysis.checkpoint.CheckpointLog method) load_alignment() (in module figures.data) load_atlas() (in module figures.data) load_attribution() (in module figures.data) load_category_map() (in module analysis.features) load_configs() (in module dscat.config) load_demographic_conditioning() (in module figures.data) load_feature_displacement() (in module figures.data) load_feature_list() (in module analysis.cohort.schema) load_frame() (in module analysis.cache) load_grain_magnitude() (in module figures.data) load_invariance() (in module figures.data) load_json() (in module analysis.cache) load_local_directional() (in module figures.data) load_local_specificity() (in module figures.data) load_local_trajectory() (in module figures.data) load_model() (in module analysis.cache) load_nmin() (in module figures.data) load_pairwise() (in module figures.data) load_pickle_typing() (in module analysis.features) load_prevalence() (in module figures.data) load_referent() (in module figures.data) load_replication() (in module figures.data) load_roughness() (in module figures.data) load_selection_summary() (in module figures.data) load_stability() (in module figures.data) load_sweep() (in module figures.data) load_synonyms() (in module dscat.synonyms) load_trajectory() (in module figures.data) local (analysis.invariance.FocalParameter attribute) local structural equation modelling local_centroids() (in module analysis.trajectory_local) local_directional() (in module figures.cli) local_panels() (in module figures.cli) local_referent() (in module figures.cli) local_specificity() (in module figures.cli) local_trajectory() (in module figures.cli) locales() (analysis.localise.HardBins method) (analysis.localise.KernelWindows method) (analysis.localise.LocalisationScheme method) LocaleSummary (class in analysis.sweep) LocalFit (class in analysis.localise) LocalisationScheme (class in analysis.localise) log (analysis.run.RunContext attribute) LogisticContrast (class in analysis.attribution) loglik (analysis.prevalence.MultinomialFit attribute) lr_stat (analysis.prevalence.JointTest attribute) lrt_p (analysis.prevalence.SlopeResult attribute) M mahalanobis (analysis.trajectory_local.ObservedTrajectory attribute) Mahalanobis (class in analysis.drift) Mahalanobis distance mahalanobis_bands (analysis.trajectory_local.BootstrapTube attribute) mahalanobis_magnitude() (in module analysis.trajectory_local) MahalanobisContribution (class in analysis.attribution) main() (in module figures.cli) manifest_path() (in module analysis.paths) mapping (analysis.align.Alignment attribute) (analysis.drift.ClassAlignment attribute) (analysis.reference.NamedAlignment attribute) MappingResolver (class in analysis.reference_scheme) markdown (dscat.output.Format attribute) marker (dscat.docs.Engine attribute) markitdown (dscat.docs.Engine attribute) max_bin_share (analysis.requirements.RequirementThresholds attribute) max_lag_correlation (analysis.requirements.RequirementThresholds attribute) max_lm (analysis.invariance.BlockResult attribute) max_reassigned_fraction (analysis.requirements.RequirementThresholds attribute) MaxEqualBins (class in analysis.strata) MeanAbsolute (class in analysis.drift) measure() (in module analysis.profiling) (in module analysis.reference_scheme) MeasureHandle (class in analysis.profiling) measurement invariance measurement lag measurement_data (analysis.model.FitResult attribute) measurement_inputs() (in module analysis.order) measurement_scale (dscat.model.FeatureRow attribute) membership_counts() (in module analysis.attribution) MembershipJaccard (class in analysis.drift) method (analysis.attribution.AttributionResult attribute) metrics (analysis.model.FitResult attribute) (analysis.replicate.ReplicationResult attribute) (analysis.run.RunContext attribute) min_bin_size (analysis.requirements.RequirementThresholds attribute) (analysis.strata.MaxEqualBins attribute) min_coverage (analysis.requirements.RequirementThresholds attribute) min_n_bins (analysis.requirements.RequirementThresholds attribute) min_projected_smallest_class (analysis.requirements.RequirementThresholds attribute) modal_assignment() (in module analysis.prevalence) mode (analysis.reference_scheme.PairwiseReference attribute) model (analysis.model.FitResult attribute) model_k (analysis.order.FitPair attribute) model_k1 (analysis.order.FitPair attribute) module analysis.align analysis.attribution analysis.axes analysis.blocks analysis.cache analysis.checkpoint analysis.cli analysis.cohort analysis.cohort.schema analysis.cohort.spark analysis.cohort.ssc analysis.config analysis.demographics analysis.drift analysis.enrich analysis.features analysis.invariance analysis.localise analysis.model analysis.order analysis.paths analysis.prevalence analysis.profiling analysis.progress analysis.reference analysis.reference_scheme analysis.replicate analysis.requirements analysis.run analysis.selection analysis.stability analysis.strata analysis.strata_data analysis.sweep analysis.trajectory analysis.trajectory_local docs_cli.cli figures.atlas figures.attribution figures.category_decomposition figures.cli figures.data figures.demographic_conditioning figures.dense_features figures.invariance figures.nmin figures.paths figures.prevalence figures.publish figures.referent_decomposition figures.replication figures.reproduction figures.roughness figures.selection figures.stability figures.style figures.trajectory figures.trajectory_local Movement (class in analysis.attribution) movements() (analysis.attribution.Comparison method) mover_contrast_figure() (in module figures.attribution) movers() (in module analysis.attribution) multinomial logistic regression MultinomialFit (class in analysis.prevalence) N n (analysis.drift.StratumSummary attribute) (analysis.invariance.BlockResult attribute) (analysis.prevalence.PrevalenceResult attribute) n_assigned (analysis.requirements.PolicyReport attribute) n_boot (analysis.trajectory_local.BootstrapTube attribute) (analysis.trajectory_local.ControlComparison attribute) n_cols (dscat.model.TableRow attribute) n_components (analysis.trajectory.Embedding property) n_covered (analysis.invariance.InvarianceResult attribute) n_dropped (analysis.order.SearchResult attribute) (analysis.order.StepResult attribute) n_features (dscat.ingest.IngestSummary attribute) n_init (analysis.order.Recipe attribute) n_joint (analysis.blocks.CoDriftResult attribute) n_min (analysis.stability.NminResult attribute) n_missing (analysis.strata.StratumAssignment attribute) n_movers (analysis.attribution.AttributionResult attribute) n_probands (analysis.cohort.CohortMatrix property) n_random (analysis.order.Recipe attribute) n_reference (analysis.invariance.InvarianceResult attribute) n_rows (dscat.model.TableRow attribute) n_samples (analysis.profiling.UnitMetrics attribute) n_sim (analysis.invariance.InvarianceResult attribute) n_stayers (analysis.attribution.AttributionResult attribute) n_tables (dscat.ingest.IngestSummary attribute) n_total (analysis.requirements.PolicyReport attribute) n_value_levels() (in module analysis.features) naive_onevsrest() (in module analysis.prevalence) name (analysis.axes.AxisSpec attribute) (analysis.demographics.DemographicSpec attribute) (analysis.localise.HardBins attribute) (analysis.localise.KernelWindows attribute) (analysis.strata.FixedBands attribute) (analysis.strata.MaxEqualBins attribute) (analysis.strata.QuantileBins attribute) (dscat.config.DatasetConfig attribute) (dscat.model.FeatureRow attribute) (figures.publish.FigureSpec attribute) NamedAlignment (class in analysis.reference) net_direction (analysis.trajectory_local.DirectionalResult attribute) net_directions() (in module analysis.trajectory_local) net_trend (analysis.trajectory_local.BootstrapTube attribute) (analysis.trajectory_local.DirectionalInference attribute) (analysis.trajectory_local.DirectionalResult attribute) nmin() (in module analysis.cli) (in module figures.cli) nmin_figure() (in module figures.nmin) NminResult (class in analysis.stability) notes (dscat.model.FeatureRow attribute) (dscat.model.TableRow attribute) null_overall (analysis.replicate.ReplicationResult attribute) null_partition() (in module analysis.drift) null_q50 (analysis.invariance.TopProcess attribute) null_q95 (analysis.invariance.TopProcess attribute) numerical_score() (in module analysis.invariance) O observed (analysis.invariance.TopProcess attribute) (analysis.requirements.RequirementResult attribute) observed_cardinality() (in module analysis.features) observed_lr (analysis.order.FitPair property) (analysis.order.StepResult attribute) observed_trajectory() (in module analysis.trajectory_local) ObservedTrajectory (class in analysis.trajectory_local) odds_ratio (analysis.prevalence.SlopeResult attribute) open() (dscat.index.Catalogue class method) open_catalogue() (in module analysis.cohort) order() (in module analysis.cli) ordered (analysis.demographics.DemographicSpec property) outcome (analysis.invariance.FocalParameter attribute) output_bytes (analysis.profiling.UnitMetrics attribute) overall (analysis.drift.ClassAlignment attribute) overall_correlation (analysis.reference.NamedAlignment attribute) (analysis.replicate.ReplicationResult attribute) (analysis.stability.Comparison attribute) overlap (analysis.stability.Comparison attribute) overlap_mean (analysis.stability.StabilitySummary attribute) P p_cvm (analysis.invariance.BlockResult attribute) p_max_lm (analysis.invariance.BlockResult attribute) p_value (analysis.blocks.CoDriftResult attribute) (analysis.blocks.GrainContrast attribute) (analysis.order.StepResult attribute) (analysis.prevalence.JointTest attribute) (analysis.replicate.ReplicationResult attribute) (analysis.trajectory_local.ControlComparison attribute) (analysis.trajectory_local.DirectionalInference attribute) (analysis.trajectory_local.FeatureInference attribute) p_value_greater (analysis.trajectory_local.ControlComparison attribute) Pairing (class in analysis.reference_scheme) pairings() (analysis.reference_scheme.PairwiseReference method) (analysis.reference_scheme.PooledReference method) (analysis.reference_scheme.ReferenceScheme method) pairwise() (in module figures.cli) PairwiseReference (class in analysis.reference_scheme) panel_title() (in module figures.style) panels_figure() (in module figures.trajectory_local) parameters (analysis.invariance.CasewiseScores attribute) params (analysis.run.RunContext attribute) parse() (in module dscat.adapters) parse_age_months() (in module analysis.cohort.schema) parse_scheme() (in module analysis.sweep) partitions (analysis.blocks.Decomposition attribute) path() (analysis.run.RunContext method) path_bytes() (in module analysis.profiling) peak_focal (analysis.trajectory_local.ObservedTrajectory attribute) peak_rss_bytes (analysis.profiling.UnitMetrics attribute) peak_rss_delta_bytes (analysis.profiling.UnitMetrics property) per_class_profile() (in module analysis.blocks) per_feature_inference() (in module analysis.trajectory_local) per_fit (analysis.stability.NminResult attribute) per_fit_criteria() (in module analysis.selection) per_iteration (analysis.selection.SelectionResult attribute) per_sample_log_likelihood() (in module analysis.invariance) permute_axis() (in module analysis.localise) phipson_smyth_p() (in module analysis.order) plane_figure() (in module figures.trajectory_local) plane_overlay_figure() (in module figures.trajectory_local) policy (analysis.localise.HardBins attribute) PolicyReport (class in analysis.requirements) pooled (analysis.prevalence.ProportionCurve attribute) (analysis.trajectory_local.ObservedTrajectory attribute) pooled() (analysis.reference_scheme.MappingResolver method) (analysis.reference_scheme.ReferenceResolver method) pooled_centroids() (in module analysis.trajectory_local) pooled_reference (analysis.reference_scheme.MappingResolver attribute) pooled_sd (analysis.drift.ReferenceModel attribute) PooledReference (class in analysis.reference_scheme) position (analysis.localise.LocalFit attribute) (analysis.reference_scheme.DriftComparison attribute) (analysis.reference_scheme.QueryFit attribute) (analysis.sweep.LocaleSummary attribute) positions (analysis.invariance.TimeGrid attribute) (analysis.invariance.TopProcess attribute) (analysis.prevalence.ProportionCurve attribute) precision (analysis.drift.ReferenceModel attribute) prepare_inputs() (in module analysis.model) presentation() (in module figures.cli) presentation_figures_dir() (in module figures.paths) prevalence prevalence() (in module analysis.cli) (in module figures.cli) prevalence_analysis() (in module analysis.prevalence) PrevalenceResult (class in analysis.prevalence) probands (analysis.invariance.CasewiseScores attribute) profile profile_alignment() (in module analysis.blocks) profile_correlation() (in module analysis.enrich) project() (in module analysis.trajectory) project_onto() (in module analysis.trajectory_local) promote() (analysis.reference_scheme.MappingResolver method) (analysis.reference_scheme.ReferenceResolver method) promoted (analysis.reference_scheme.MappingResolver attribute) proportion_curve_figure() (in module figures.prevalence) ProportionCurve (class in analysis.prevalence) proportions() (analysis.prevalence.MultinomialFit method) publish() (in module figures.cli) publish_figure() (in module figures.publish) published_signature() (in module analysis.reference) Q q (analysis.invariance.InvarianceResult attribute) (analysis.strata.QuantileBins attribute) qualified_id (dscat.model.FeatureRow attribute) quality (analysis.drift.ClassAlignment attribute) quantile_span (analysis.localise.KernelWindows attribute) QuantileBins (class in analysis.strata) quantiles (analysis.trajectory_local.BootstrapTube attribute) query (analysis.reference_scheme.DriftComparison attribute) query_label (analysis.reference_scheme.DriftComparison attribute) (analysis.reference_scheme.Pairing attribute) QueryFit (class in analysis.reference_scheme) R read_against_null() (in module analysis.drift) read_columns() (in module analysis.cohort) read_manifest() (in module analysis.cache) read_sheet() (in module dscat.dictionary) rebuild_fts() (dscat.index.Catalogue method) Recipe (class in analysis.order) reconcile() (in module analysis.features) ref_class (analysis.attribution.Movement attribute) (analysis.prevalence.SlopeResult attribute) ref_labels (analysis.attribution.Comparison attribute) reference (analysis.attribution.Comparison attribute) (analysis.reference_scheme.DriftComparison attribute) reference_kind (analysis.reference_scheme.Pairing attribute) reference_label (analysis.reference_scheme.DriftComparison attribute) (analysis.reference_scheme.Pairing attribute) ReferenceModel (class in analysis.drift) ReferenceResolver (class in analysis.reference_scheme) ReferenceScheme (class in analysis.reference_scheme) referent referent_decomposition() (in module figures.cli) referent_decomposition_figure() (in module figures.referent_decomposition) referent_figure() (in module figures.trajectory_local) referent_grains() (in module analysis.trajectory_local) reject (analysis.blocks.GrainContrast attribute) (analysis.prevalence.SlopeResult attribute) (analysis.trajectory_local.DirectionalInference attribute) (analysis.trajectory_local.FeatureInference attribute) reject_cvm (analysis.invariance.BlockResult attribute) reject_max_lm (analysis.invariance.BlockResult attribute) rejected (analysis.order.StepResult attribute) removed (dscat.diff.DiffResult attribute) render() (in module dscat.output) replicate() (in module analysis.cli) (in module figures.cli) replication_figure() (in module figures.replication) ReplicationResult (class in analysis.replicate) report() (in module analysis.cli) reproduce() (in module figures.cli) reproduction_figure() (in module figures.reproduction) RequirementResult (class in analysis.requirements) RequirementThresholds (class in analysis.requirements) residualise() (in module analysis.blocks) resolve_comparisons() (in module analysis.reference_scheme) resolve_engine() (in module dscat.docs) resolve_run() (in module figures.data) responsibilities (analysis.invariance.CasewiseScores attribute) responsibilities() (in module analysis.invariance) results (analysis.requirements.PolicyReport attribute) role (dscat.model.TableRow attribute) roles (dscat.config.DatasetConfig attribute) roles_applicable (dscat.model.FeatureRow attribute) root (analysis.axes.AxisContext attribute) roughness() (in module figures.cli) roughness_figure() (in module figures.roughness) roughness_metrics() (in module analysis.trajectory) run_context() (in module analysis.run) run_dir (analysis.run.RunContext attribute) run_dir() (in module analysis.paths) run_hash (analysis.run.RunContext attribute) run_ingest() (in module dscat.ingest) run_invariance() (in module analysis.invariance) run_multi_init_stability() (in module analysis.stability) run_nmin_sweep() (in module analysis.stability) run_replication() (in module analysis.replicate) run_selection() (in module analysis.selection) run_subsampling_stability() (in module analysis.stability) RunContext (class in analysis.run) S save_figure() (in module figures.style) save_frame() (in module analysis.cache) save_json() (in module analysis.cache) save_model() (in module analysis.cache) Schedule (class in analysis.order) score-based invariance test search() (in module dscat.queries) SearchResult (class in analysis.order) seed (analysis.axes.AxisContext attribute) select() (in module analysis.cli) (in module figures.cli) selection_figure() (in module figures.selection) selection_metrics() (in module analysis.model) SelectionResult (class in analysis.selection) sensitivity() (in module analysis.cli) separation() (in module analysis.trajectory_local) sequential_search() (in module analysis.order) serialise_summary() (in module analysis.drift) serve() (in module docs_cli.cli) seven phenotype categories share (analysis.blocks.Decomposition attribute) shared_feature_set() (in module analysis.replicate) shared_features (analysis.replicate.ReplicationResult attribute) shared_index (analysis.attribution.Comparison property) sheet (dscat.config.DatasetConfig attribute) sheet_names() (in module dscat.dictionary) ship_folder (dscat.config.Version attribute) short_hash() (in module analysis.cache) shrinkage (analysis.blocks.ConditioningResult attribute) signed_shift() (in module analysis.attribution) signed_slope (analysis.trajectory_local.BootstrapTube attribute) (analysis.trajectory_local.DirectionalInference attribute) (analysis.trajectory_local.DirectionalResult attribute) signed_trajectory (analysis.trajectory_local.BootstrapTube attribute) (analysis.trajectory_local.DirectionalResult attribute) simulate_bridge_band() (in module analysis.invariance) simulate_bridge_null() (in module analysis.invariance) simulate_null() (in module analysis.order) single_break() (in module analysis.trajectory_local) single_threaded_blas() (in module analysis.profiling) skip_sheets (dscat.config.DatasetConfig attribute) slope (analysis.prevalence.SlopeResult attribute) (analysis.trajectory_local.DirectionalResult attribute) slope_norm (analysis.trajectory_local.DirectionalResult attribute) slope_vectors() (in module analysis.trajectory_local) SlopeResult (class in analysis.prevalence) small_lag_years (analysis.requirements.RequirementThresholds attribute) smallest_class_fraction (analysis.requirements.RequirementThresholds attribute) smallest_class_proportion (analysis.stability.Comparison attribute) smd_flag (analysis.requirements.RequirementThresholds attribute) sort_key (dscat.config.Version property) source_csv() (in module analysis.cohort) source_sheet (dscat.model.FeatureRow attribute) source_stage (figures.publish.FigureSpec attribute) span (analysis.trajectory_local.DirectionalResult attribute) SPARK SparkCohort (class in analysis.cohort.spark) spec (analysis.requirements.PolicyReport attribute) (analysis.strata.StratumAssignment attribute) spec() (analysis.localise.HardBins method) (analysis.localise.KernelWindows method) (analysis.localise.LocalisationScheme method) (analysis.order.Recipe method) (analysis.order.Schedule method) (analysis.reference_scheme.PairwiseReference method) (analysis.reference_scheme.PooledReference method) (analysis.reference_scheme.ReferenceScheme method) (analysis.strata.BinningPolicy method) (analysis.strata.FixedBands method) (analysis.strata.MaxEqualBins method) (analysis.strata.QuantileBins method) specificity_figure() (in module figures.trajectory_local) specificity_panels_figure() (in module figures.trajectory_local) split_warm_params() (in module analysis.order) squared_magnitude (analysis.blocks.Decomposition attribute) SSC SscCohort (class in analysis.cohort.ssc) stability() (in module analysis.cli) (in module figures.cli) stability_figure() (in module figures.stability) StabilitySummary (class in analysis.stability) stacked_area_figure() (in module figures.prevalence) stacked_area_pair_figure() (in module figures.prevalence) stage (analysis.run.RunContext attribute) stage_dir() (in module analysis.paths) StandardisedContribution (class in analysis.attribution) StandardisedEuclidean (class in analysis.drift) start_rss_bytes (analysis.profiling.UnitMetrics attribute) status (analysis.requirements.RequirementResult attribute) StepResult (class in analysis.order) steps (analysis.order.SearchResult attribute) strata (analysis.axes.AxisContext attribute) strata() (in module analysis.cli) strata_describe() (in module analysis.cli) StrataData (class in analysis.strata_data) stratify() (in module analysis.cli) stratum (analysis.attribution.Comparison attribute) StratumAssignment (class in analysis.strata) StratumSummary (class in analysis.drift) strip_version_suffix (dscat.config.DatasetConfig attribute) summarise() (in module analysis.drift) (in module analysis.profiling) (in module analysis.strata_data) summarise_local_worker() (in module analysis.sweep) summarise_locale() (in module analysis.sweep) summarise_pseudo_stratum() (in module analysis.drift) summary (analysis.reference_scheme.QueryFit attribute) (analysis.selection.SelectionResult attribute) (analysis.stability.NminResult attribute) (analysis.sweep.LocaleSummary attribute) supported_k (analysis.order.SearchResult attribute) supports_timing() (analysis.cohort.Cohort method) (analysis.cohort.spark.SparkCohort method) (analysis.cohort.ssc.SscCohort method) sweep() (in module analysis.cli) (in module figures.cli) sweep_decision() (in module analysis.sweep) T t (analysis.invariance.TimeGrid attribute) (analysis.invariance.TopProcess attribute) table (dscat.output.Format attribute) table_name (dscat.model.FeatureRow attribute) (dscat.model.TableRow attribute) TableRow (class in dscat.model) tables_added (dscat.diff.DiffResult attribute) tables_removed (dscat.diff.DiffResult attribute) task_bar() (in module analysis.progress) test_block() (in module analysis.invariance) textutil (dscat.docs.Engine attribute) three-step estimator threshold (analysis.requirements.RequirementResult attribute) tier (analysis.requirements.RequirementResult attribute) TimeGrid (class in analysis.invariance) to_dict() (analysis.profiling.UnitMetrics method) to_frame() (analysis.requirements.PolicyReport method) to_v (dscat.diff.DiffResult attribute) top_process (analysis.invariance.InvarianceResult attribute) TopProcess (class in analysis.invariance) total_cost (analysis.align.Alignment attribute) total_log_likelihood() (in module analysis.order) trajectory() (in module analysis.cli) (in module figures.cli) trajectory_figure() (in module figures.trajectory) transformer (analysis.trajectory.Embedding attribute) tsv (dscat.output.Format attribute) Typing (class in analysis.features) U UnitMetrics (class in analysis.profiling) UnivariateContrast (class in analysis.attribution) upsert_dataset() (dscat.index.Catalogue method) upsert_version() (dscat.index.Catalogue method) V validation_log_likelihood() (in module analysis.selection) value_coding (dscat.model.FeatureRow attribute) values (analysis.invariance.CasewiseScores attribute) version (analysis.cohort.CohortMatrix attribute) Version (class in dscat.config) version (dscat.config.Version attribute) (dscat.model.FeatureRow attribute) (dscat.model.TableRow attribute) version_dir (dscat.config.Version attribute) version_pattern (dscat.config.DatasetConfig attribute) version_sort_key() (in module dscat.config) versions (dscat.ingest.IngestSummary attribute) versions() (dscat.index.Catalogue method) (in module docs_cli.cli) vlmr (analysis.order.SearchResult attribute) vlmr_test() (in module analysis.order) W wald_p (analysis.prevalence.SlopeResult attribute) wall_s (analysis.profiling.UnitMetrics attribute) warm_em() (in module analysis.order) weights (analysis.localise.LocalFit attribute) whole (analysis.blocks.Decomposition attribute) write_manifest() (in module analysis.cache)